Video Tutorial
This section will include access to a test datasest to learn how to use STEGO.R.
This will include the video tutorials.
Datasets
Tutorial directory (https://zenodo.org/records/12665808) that contains the melanoma dataset with the lymph node and tumor single cell sample.
The T cell atlas V2 (https://zenodo.org/records/12569981) will be used to demonstrate some of the functionality in Step 4. Analysis and post-analysis section.
Quality control (Steps 1 to 3)
If you already have an .rds seurat object, and the TCR data was processed with scRepertoire proceed to Step 3e. to reformat the meta-data and then step 3c (annotation) and 3d (option).
STEP 1.
STEP 2.
STEP 3a.
STEP 3b.
STEP 3c.
Why use semi-supervised annotations?
What are the available annotation models in STEGO.R?
How to do a custom annotation?